Stem-loop fve-MIR11288a

Accession

MI0036434

Description

Fragaria vesca fve-MIR11288a precursor miRNA

Sequence

57382 reads, 5993.0 reads per million, 18 experiments

cugcacCACAAUUGGCCACCUCCCAAUUGaaacuuaggguuuuagaugcucaaaucuuaguuugaaaUGGGAUUUGGCGAAUUGUGGUcgag
((..(((((((((.((((..(((((.((.(((((.(((((((.((...)).)))))))))))).)).)))))..)))).)))))))))..))

Structure

  gc         G    CC     A  G     u       u  a 
cu  acCACAAUU GCCA  UCCCA UU aaacu aggguuu ag  
||  ||||||||| ||||  ||||| || ||||| ||||||| || u
ga  UGGUGUUAA CGGU  AGGGU aa uuuga uucuaaa uc  
  gc         G    UU     a  g     -       c  g 

Annotation confidence High

Genome context

LG3: 25352228-25352319 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fve-MIR11288a

Mature fve-miR11288a-5p

• Accession: MIMAT0060560
• Description: Fragaria vesca fve-miR11288a-5p mature miRNA
• Sequence: 7 - CACAAUUGGCCACCUCCCAAUUG - 29
• Evidence: experimental ; unknown

Mature fve-miR11288a-3p

• Accession: MIMAT0044573
• Description: Fragaria vesca fve-miR11288a-3p mature miRNA
• Sequence: 68 - UGGGAUUUGGCGAAUUGUGGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610