Stem-loop fve-MIR11291

Accession

MI0036435

Description

Fragaria vesca fve-MIR11291 precursor miRNA

Sequence

54228 reads, 5007.0 reads per million, 18 experiments

ggaaaacccuaauucgacUGGAAAAAGAAAGACCGCAAAGAagcccaggacuuucgccgccccuuucuucacagaaaggcuggcucuuggcgcccgggaaauccuUUGCGGUCUUGUCUCUUCCAAUucgaauucggguuuuuu
.((((((((.(((((((.(((((..(((((((((((((((...(((.((.....((((((((((((((....)))))))..)))....)))))).))).....)))))))))))).))).)))))..))))))).)))))))).

Structure

g        u       -c     AA   -            --Aag   a  acuuu    ----   --       u 
 gaaaaccc aauucga  UGGAA  AGA AAGACCGCAAAG     ccc gg     cgcc    gcc  ccuuucu c
 |||||||| |||||||  |||||  ||| ||||||||||||     ||| ||     ||||    |||  |||||||  
 uuuuuggg uuaagcu  ACCUU  UCU UUCUGGCGUUuc     ggg cc     gcgg    cgg  ggaaaga a
u        c       UA     -C   G            cuaaa   c  -----    uucu   uc       c 

Annotation confidence High

Genome context

LG7: 15528972-15529115 [-]

Mature fve-miR11291-5p

• Accession: MIMAT0060561
• Description: Fragaria vesca fve-miR11291-5p mature miRNA
• Sequence: 19 - UGGAAAAAGAAAGACCGCAAAGA - 41
• Evidence: experimental ; unknown

Mature fve-miR11291-3p

• Accession: MIMAT0044574
• Description: Fragaria vesca fve-miR11291-3p mature miRNA
• Sequence: 106 - UUGCGGUCUUGUCUCUUCCAAU - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610