Stem-loop fve-MIR11301

Accession

MI0036445

Description

Fragaria vesca fve-MIR11301 precursor miRNA

Sequence

34616 reads, 2706.0 reads per million, 18 experiments

ggcuccaugguugaucuUCAGAGUUGUAAUAUAUUGAUaaaugcauguugcaaggguggagaggucgauaaggccaacacgauuuucaguauauuacccuuugcuuuuaUCAAUAUGCUACAACUAUGAAcauccacuauggaacu
...((((((((.(((.((((.(((((((.((((((((((((.(((......(((((((....((((.....))))...((........))....)))))))))).)))))))))))).))))))).)))).))).))))))))...

Structure

ggc        u   c    G       A            u   uguugc       ---------------gaga    g 
   uccauggu gau uUCA AGUUGUA UAUAUUGAUaaa gca      aagggug                   gguc a
   |||||||| ||| |||| ||||||| |||||||||||| |||      |||||||                   |||| u
   agguauca cua AAGU UCAACAU GUAUAACUauuu cgu      uucccau                   ccgg a
uca        c   c    A       C            u   ------       uauaugacuuuuagcacaa    a 

Annotation confidence High

Genome context

LG2: 1429952-1430097 [+]

Mature fve-miR11301-5p

• Accession: MIMAT0044584
• Description: Fragaria vesca fve-miR11301-5p mature miRNA
• Sequence: 18 - UCAGAGUUGUAAUAUAUUGAU - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR11301-3p

• Accession: MIMAT0060570
• Description: Fragaria vesca fve-miR11301-3p mature miRNA
• Sequence: 110 - UCAAUAUGCUACAACUAUGAA - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610