Stem-loop fve-MIR11288d

Accession

MI0036461

Description

Fragaria vesca fve-MIR11288d precursor miRNA

Sequence

ggggauccgaguccgcugcguuuuuaaaacggugaagaucuagggucuucgaucagcaauucgucacauuccaguucaaacugagcagcagucggauauggccgacguacugaagagagucugaauugggauuuggcgaauugagggucgcgauuaauagaugUCCAUCGUUUUGAGACACAGGagaagcggguuccu
(((((((((..((..(((.(((((.(((((((((.(.(((((.((((..(((((..((((((((((.(((((((((((.(((...(((..(((((......)))))...))).....))).))))))))))).))))))))))..))))).))))..))))).).)))))))))))))).)))..))..)))))))))

Structure

         ag  cg   c     u         a g     -g    uu     ag          c           a   --gag   -ca     au 
ggggauccg  uc  cug guuuu aaaacggug a aucua  gguc  cgauc  caauucguca auuccaguuca acu     cag   gucgg  a
|||||||||  ||  ||| ||||| ||||||||| | |||||  ||||  |||||  |||||||||| ||||||||||| |||     |||   |||||   
uccuugggc  ag  GAC CAGAG UUUUGCUAC U uagau  uuag  gcugg  guuaagcggu uaggguuaagu uga     guc   cagcc  u
         ga  aG   A     -         C g     aa    -c     ga          u           c   gagaa   aug     gg 

Annotation confidence Not enough data

Genome context

LG3: 25355853-25356050 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fve-MIR11288d

Mature fve-miR11288d

• Accession: MIMAT0044600
• Description: Fragaria vesca fve-miR11288d mature miRNA
• Sequence: 164 - UCCAUCGUUUUGAGACACAGG - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610