Accession
MI0036461
Description
Fragaria vesca
fve-MIR11288d precursor miRNA
Sequence
45864
reads,
4389.0
reads per million, 18 experiments
ggggauccgaguccgcugcguuuuuaaaacggugaagaUCUAGGGUCUUCGAUCAGCAAuucgucacauuccaguucaaacugagcagcagucggauauggccgacguacugaagagagucugaauugggauuuggcgaauugagggucgcgauuaauagaugUCCAUCGUUUUGAGACACAGGagaagcggguuccu
(((((((((..((..(((.(((((.(((((((((.(.(((((.((((..(((((..((((((((((.(((((((((((.(((...(((..(((((......)))))...))).....))).))))))))))).))))))))))..))))).))))..))))).).)))))))))))))).)))..))..)))))))))
(((((((((..((..(((.(((((.(((((((((.(.(((((.((((..(((((..((((((((((.(((((((((((.(((...(((..(((((......)))))...))).....))).))))))))))).))))))))))..))))).))))..))))).).)))))))))))))).)))..))..)))))))))
Structure
ag cg c u a g -G UU AG c a --gag -ca au
ggggauccg uc cug guuuu aaaacggug a aUCUA GGUC CGAUC CAAuucguca auuccaguuca acu cag gucgg a
||||||||| || ||| ||||| ||||||||| | ||||| |||| ||||| |||||||||| ||||||||||| ||| ||| |||||
uccuugggc ag GAC CAGAG UUUUGCUAC U uagau uuag gcugg guuaagcggu uaggguuaagu uga guc cagcc u
ga aG A - C g aa -c ga u c gagaa aug gg
Annotation confidence
Low
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Genome context
LG3: 25355853-25356050 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from fve-MIR11288d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature fve-miR11288d-5p
| Accession | MIMAT0060584 |
| Description | Fragaria vesca fve-miR11288d-5p mature miRNA |
| Sequence | 39 - UCUAGGGUCUUCGAUCAGCAA - 59 |
| Evidence |
experimental
unknown |
Mature fve-miR11288d-3p
| Accession | MIMAT0044600 |
| Description | Fragaria vesca fve-miR11288d-3p mature miRNA |
| Sequence | 164 - UCCAUCGUUUUGAGACACAGG - 184 |
| Evidence |
experimental
Illumina [1] |
References
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