Stem-loop pab-MIR156a

Accession

MI0036561

Description

Picea abies pab-MIR156a precursor miRNA

Literature search

3 open access papers mention pab-MIR156a
(8 sentences)

Sequence

130155 reads, 9937.0 reads per million, 102 experiments

gccucgaucuguugagugcUGACAGAAGAGAGUGAGCACacauagcaggagcucaugagacuaugaguucagccaugcguGCUCACGUCUCUUUCUGUCAGCggcucaucgggagcgaucucaggc
((((((.((((.(((((((((((((((((((((((((((.(((.((..(((((((((....))))))))).)).))).)))))))).)))).)))))))))).))))).))))..))).....)))

Structure

   -----   -a    u     -          -    -        a   a  ag         a 
gcc     ucg  ucug ugagu gcUGACAGAA GAGA GUGAGCAC cau gc  gagcucaug g
|||     |||  |||| ||||| |||||||||| |||| |||||||| ||| ||  |||||||||  
cgg     agc  gggc acucg CGACUGUCUU CUCU CACUCGug gua cg  cuugaguau a
   acucu   ga    u     g          U    G        c   c  -a         c 

Annotation confidence High

Genome context

MA_102488: 7169-7294 [-]

Mature pab-miR156a-5p

• Accession: MIMAT0044659
• Description: Picea abies pab-miR156a-5p mature miRNA
• Sequence: 20 - UGACAGAAGAGAGUGAGCAC - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR156a-3p

• Accession: MIMAT0057444
• Description: Picea abies pab-miR156a-3p mature miRNA
• Sequence: 81 - GCUCACGUCUCUUUCUGUCAGC - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918