Stem-loop pab-MIR156b

Accession

MI0036562

Description

Picea abies pab-MIR156b precursor miRNA

Literature search

2 open access papers mention pab-MIR156b
(7 sentences)

Sequence

44321 reads, 3872.0 reads per million, 81 experiments

gaagggcuuguuggguaaggugcUGACAGAAGAGAGUGGGCACacauagccccuagcauuucuuguguggggggcgcugcguGCCCAUAUCUCUUUCUGUCAGCucucaacggaaggacggucuuc
(((((.(((.((..((..((.((((((((((((((((((((((.((..((((((.((((.....)))).))))))..)).)))))))).)))).)))))))))).))..))..)).)).).)))))

Structure

     g -  g  gg  aa  u          -    -        a  ua      a    u 
gaagg c uu uu  gu  gg gcUGACAGAA GAGA GUGGGCAC ca  gccccu gcau u
||||| | || ||  ||  || |||||||||| |||| |||||||| ||  |||||| |||| c
cuucu g ag aa  ca  uc CGACUGUCUU CUCU UACCCGug gu  cggggg ugug u
     g c  g  gg  ac  u          U    A        c  cg      g    u 

Annotation confidence High

Genome context

MA_1131: 52188-52313 [-]

Mature pab-miR156b-5p

• Accession: MIMAT0044660
• Description: Picea abies pab-miR156b-5p mature miRNA
• Sequence: 24 - UGACAGAAGAGAGUGGGCAC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR156b-3p

• Accession: MIMAT0057445
• Description: Picea abies pab-miR156b-3p mature miRNA
• Sequence: 83 - GCCCAUAUCUCUUUCUGUCAGC - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918