Stem-loop pab-MIR156c

Accession

MI0036563

Description

Picea abies pab-MIR156c precursor miRNA

Literature search

2 open access papers mention pab-MIR156c
(7 sentences)

Sequence

44317 reads, 3875.0 reads per million, 81 experiments

ggguuuguuggguaagguccUGACAGAAGAGAGUGGGCACacauagguucuagcauuuccuguguguggaucgcugcguGCCCAUAUCUCUUUCUGUCAGCucuaaacagacggacgggccu
(((((((((.(((..((..(((((((((((((((((((((.((..(((((..((((.....))))..)))))..)).)))))))).)))).)))))))))..))..))...).)))))))))

Structure

         g ---  aa  uc         -    -        a  ua     ua    u 
ggguuuguu g   gu  gg  cUGACAGAA GAGA GUGGGCAC ca  gguuc  gcau u
||||||||| |   ||  ||  ||||||||| |||| |||||||| ||  |||||  |||| c
uccgggcag c   ca  uc  GACUGUCUU CUCU UACCCGug gu  cuagg  ugug c
         g aga  aa  uC         U    A        c  cg     ug    u 

Annotation confidence High

Genome context

MA_18187: 14336-14457 [-]

Mature pab-miR156c-5p

• Accession: MIMAT0044661
• Description: Picea abies pab-miR156c-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGGGCAC - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR156c-3p

• Accession: MIMAT0057446
• Description: Picea abies pab-miR156c-3p mature miRNA
• Sequence: 80 - GCCCAUAUCUCUUUCUGUCAGC - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918