Stem-loop pab-MIR156g

Accession

MI0036567

Description

Picea abies pab-MIR156g precursor miRNA

Literature search

2 open access papers mention pab-MIR156g
(7 sentences)

Sequence

43204 reads, 3687.0 reads per million, 83 experiments

gauguuuuaggguugucccgugcUGACAGAAGAGAGUGGGCACacauauccccuagcauaguuuaugugugaggcgauguguGCCCACCGGCUCAUUCUGUCUGCaugauucccaaacuuc
((.((((..(((..(((..((((.((((((((((.(((((((((((..((.(((.(((((.....))))).))).)))))))))))))...))).))))))).))))))).))))))).))

Structure

  u    ua   uu   cc    U       -   --A           ua  c   a     g 
ga guuu  ggg  guc  gugc GACAGAA GAG   GUGGGCACaca  uc ccu gcaua u
|| ||||  |||  |||  |||| ||||||| |||   |||||||||||  || ||| ||||| u
cu caaa  ccc  uag  uaCG CUGUCUU CUC   CACCCGugugu  ag gga ugugu u
  u    --   -u   --    U       A   GGC           --  c   g     a 

Annotation confidence High

Genome context

MA_348195: 5786-5906 [-]

Mature pab-miR156g-5p

• Accession: MIMAT0044665
• Description: Picea abies pab-miR156g-5p mature miRNA
• Sequence: 24 - UGACAGAAGAGAGUGGGCAC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR156g-3p

• Accession: MIMAT0057447
• Description: Picea abies pab-miR156g-3p mature miRNA
• Sequence: 83 - GCCCACCGGCUCAUUCUGUCUGC - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918