Stem-loop pab-MIR156h

Accession

MI0036568

Description

Picea abies pab-MIR156h precursor miRNA

Literature search

2 open access papers mention pab-MIR156h
(7 sentences)

Sequence

43180 reads, 3689.0 reads per million, 83 experiments

aggaagaccuuguuggauaaggugcUGACAGAAGAGAGUGGGCACacauaacuccuaacauuguuuguguguggagagaugcguGCCUACCGUCUCUUUCUGUCAGCUcucaacggaggcacuauccu
((((((.((((((((....(((.((((((((((((((((((((((.(((..((((..((((.....))))..))))..))).))))))))..)))).))))))))))))))))).))))..)).))))

Structure

    -  -a    -    gaua   u          -    --        a   aa    ua    u 
agga ag  ccuu guug    agg gcUGACAGAA GAGA  GUGGGCAC cau  cucc  acau g
|||| ||  |||| ||||    ||| |||||||||| ||||  |||||||| |||  ||||  |||| u
uccu uc  ggag caac    ucU CGACUGUCUU CUCU  CAUCCGug gua  gagg  ugug u
    a  ac    g    ----   -          U    GC        c   ga    ug    u 

Annotation confidence High

Genome context

MA_352257: 4899-5026 [+]

Mature pab-miR156h-5p

• Accession: MIMAT0044666
• Description: Picea abies pab-miR156h-5p mature miRNA
• Sequence: 26 - UGACAGAAGAGAGUGGGCAC - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR156h-3p

• Accession: MIMAT0057448
• Description: Picea abies pab-miR156h-3p mature miRNA
• Sequence: 85 - GCCUACCGUCUCUUUCUGUCAGCU - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918