Stem-loop pab-MIR156j

Accession

MI0036570

Description

Picea abies pab-MIR156j precursor miRNA

Literature search

2 open access papers mention pab-MIR156j
(7 sentences)

Sequence

43212 reads, 3520.0 reads per million, 87 experiments

ggauguccugugcUGACAGAAGAGAGUGGGCACacauauccccuagcauggcuuaugugugaggcgaugcguGCCCACCGGCUCAUUCUGUCUGCaugaaucc
((((.((..((((.((((((((((.((((((((.(((..((.(..(((((...)))))..).))..))).))))))))...))).))))))).))))))))))

Structure

    g  cu    U       -   --A        a   au  c ua     g 
ggau uc  gugc GACAGAA GAG   GUGGGCAC cau  cc c  gcaug  
|||| ||  |||| ||||||| |||   |||||||| |||  || |  ||||| c
ccua ag  uaCG CUGUCUU CUC   CACCCGug gua  gg g  uguau  
    -  --    U       A   GGC        c   gc  a ug     u 

Annotation confidence High

Genome context

MA_631928: 2096-2198 [-]

Mature pab-miR156j-5p

• Accession: MIMAT0044668
• Description: Picea abies pab-miR156j-5p mature miRNA
• Sequence: 14 - UGACAGAAGAGAGUGGGCAC - 33
• Evidence: experimental ; Illumina [1]

Mature pab-miR156j-3p

• Accession: MIMAT0057449
• Description: Picea abies pab-miR156j-3p mature miRNA
• Sequence: 73 - GCCCACCGGCUCAUUCUGUCUGC - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918