Stem-loop pab-MIR156k

Accession

MI0036571

Description

Picea abies pab-MIR156k precursor miRNA

Literature search

2 open access papers mention pab-MIR156k
(7 sentences)

Sequence

43378 reads, 3788.0 reads per million, 81 experiments

gcUGACAGAAGAGAGUGGGCACacauagcuccuagcauuuccuguguggggggcgcugcguGCCCAUAGCUCUUUCUGUCAGC
(((((((((((((.((((((((.((..((((((.((((.....)))).))))))..)).))))))))..))).))))))))))

Structure

          -   -A        a  ua      a    u 
gcUGACAGAA GAG  GUGGGCAC ca  gcuccu gcau u
|||||||||| |||  |||||||| ||  |||||| |||| c
CGACUGUCUU CUC  UACCCGug gu  cggggg ugug c
          U   GA        c  cg      g    u 

Annotation confidence High

Genome context

MA_7545888: 483-565 [-]

Mature pab-miR156k-5p

• Accession: MIMAT0044669
• Description: Picea abies pab-miR156k-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGGGCAC - 22
• Evidence: experimental ; Illumina [1]

Mature pab-miR156k-3p

• Accession: MIMAT0057450
• Description: Picea abies pab-miR156k-3p mature miRNA
• Sequence: 62 - GCCCAUAGCUCUUUCUGUCAGC - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918