Stem-loop pab-MIR156l

Accession

MI0036572

Description

Picea abies pab-MIR156l precursor miRNA

Literature search

2 open access papers mention pab-MIR156l
(7 sentences)

Sequence

122745 reads, 9289.0 reads per million, 102 experiments

aggaaguccuuguuggauaaggugcUGACAGAAGAGAGUGAGCACacauagccccuagcauuguuuguguguggagagaugcgugcccaccgucuCUUUCUGUCAGCUCUCAACGGAggcacuauccu
(((((((((((((((....(((.(((((((((((((((((.((((.(((..(.((..((((.....))))..)).)..))).)))).)))..)))).))))))))))))))))).)))).))).))))

Structure

    -   -    -    gaua   u          -    --   A    a   ag c  ua    u 
agga agu ccuu guug    agg gcUGACAGAA GAGA  GUG GCAC cau  c cc  gcau g
|||| ||| |||| ||||    ||| |||||||||| ||||  ||| |||| |||  | ||  |||| u
uccu uca ggAG CAAC    UCU CGACUGUCUU Cucu  cac cgug gua  g gg  ugug u
    a   c    G    ----   -          U    gc   c    c   ga a  ug    u 

Annotation confidence Not enough data

Genome context

MA_8200676: 50-177 [-]

Mature pab-miR156l-5p

• Accession: MIMAT0044670
• Description: Picea abies pab-miR156l-5p mature miRNA
• Sequence: 26 - UGACAGAAGAGAGUGAGCAC - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR156l-3p

• Accession: MIMAT0057451
• Description: Picea abies pab-miR156l-3p mature miRNA
• Sequence: 96 - CUUUCUGUCAGCUCUCAACGGA - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918