Stem-loop pab-MIR156m

Accession

MI0036573

Description

Picea abies pab-MIR156m precursor miRNA

Literature search

2 open access papers mention pab-MIR156m
(7 sentences)

Sequence

2507 reads, 224.0 reads per million, 75 experiments

uguugUUGACAGAAGAUAGAGGGCACaugcgcuuacuuucagagaaucugcaauugggggacauguGCCUUCUAUUCUUCUGCCAGCCcauca
....((((.(((((((((((((((((((((.((((.((.((((...)))).)).)))).).))))))))))))).))))))).))))......

Structure

--uguu    A       -             - g    c  u    g 
      gUUG CAGAAGA UAGAGGGCACaug c cuua uu caga  
      |||| ||||||| ||||||||||||| | |||| || |||| a
      CGAC GUCUUCU AUCUUCCGuguac g gggu aa gucu  
acuacC    C       U             a g    u  c    a 

Annotation confidence High

Genome context

MA_10098525: 5153-5245 [-]

Mature pab-miR156m-5p

• Accession: MIMAT0044671
• Description: Picea abies pab-miR156m-5p mature miRNA
• Sequence: 6 - UUGACAGAAGAUAGAGGGCAC - 26
• Evidence: experimental ; Illumina [1]

Mature pab-miR156m-3p

• Accession: MIMAT0057452
• Description: Picea abies pab-miR156m-3p mature miRNA
• Sequence: 67 - GCCUUCUAUUCUUCUGCCAGCC - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918