Stem-loop pab-MIR156n

Accession

MI0036574

Description

Picea abies pab-MIR156n precursor miRNA

Literature search

2 open access papers mention pab-MIR156n
(7 sentences)

Sequence

2506 reads, 224.0 reads per million, 75 experiments

uguugUUGACAGAAGAUAGAGGGCACaugcgcuuacuuucagagaaucugcaauugggggacauguGCCUUCUAUUCUUCUGCCAGCCcauca
....((((.(((((((((((((((((((((.((((.((.((((...)))).)).)))).).))))))))))))).))))))).))))......

Structure

--uguu    A       -             - g    c  u    g 
      gUUG CAGAAGA UAGAGGGCACaug c cuua uu caga  
      |||| ||||||| ||||||||||||| | |||| || |||| a
      CGAC GUCUUCU AUCUUCCGuguac g gggu aa gucu  
acuacC    C       U             a g    u  c    a 

Annotation confidence High

Genome context

MA_3445207: 453-545 [+]

Mature pab-miR156n-5p

• Accession: MIMAT0044672
• Description: Picea abies pab-miR156n-5p mature miRNA
• Sequence: 6 - UUGACAGAAGAUAGAGGGCAC - 26
• Evidence: experimental ; Illumina [1]

Mature pab-miR156n-3p

• Accession: MIMAT0057453
• Description: Picea abies pab-miR156n-3p mature miRNA
• Sequence: 67 - GCCUUCUAUUCUUCUGCCAGCC - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918