Stem-loop pab-MIR156x

Accession

MI0036583

Description

Picea abies pab-MIR156x precursor miRNA

Literature search

2 open access papers mention pab-MIR156x
(7 sentences)

Sequence

1604 reads, 128.0 reads per million, 41 experiments

gaagguguuggugUGACAGGAGAUAGAGAGCACauacguucacaugcagagagucugcuuuugagauguauguGCUCUCUAUGCUUCUGUCGUCacauuacaccuuc
((((((((..((((((((((((((((((((((((((((((((...(((((...)))))...))).))))))))))))))))).))))))))).)))...))))))))

Structure

        -ug   -         -                 -   cau     g 
gaaggugu   gug UGACAGGAG AUAGAGAGCACauacgu uca   gcaga  
||||||||   ||| ||||||||| ||||||||||||||||| |||   ||||| a
cuuccaca   caC GCUGUCUUC UAUCUCUCGuguaugua agu   cgucu  
        uua   U         G                 g   uuu     g 

Annotation confidence High

Genome context

MA_125740: 7245-7351 [-]

Mature pab-miR156x-5p

• Accession: MIMAT0044681
• Description: Picea abies pab-miR156x-5p mature miRNA
• Sequence: 14 - UGACAGGAGAUAGAGAGCAC - 33
• Evidence: experimental ; Illumina [1]

Mature pab-miR156x-3p

• Accession: MIMAT0057455
• Description: Picea abies pab-miR156x-3p mature miRNA
• Sequence: 74 - GCUCUCUAUGCUUCUGUCGUC - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918