Stem-loop pab-MIR156aa

Accession

MI0036586

Description

Picea abies pab-MIR156aa precursor miRNA

Literature search

2 open access papers mention pab-MIR156aa
(7 sentences)

Sequence

1630 reads, 125.0 reads per million, 40 experiments

gaggguguugauguugcUGACAGGAGAUAGAGAGCACaugcgcucacaugcagagggucugcguuugagguguauguGCUCUCUAUUCUCCUGUCGUCauauuacgccuuc
((((((((.(((((.((.((((((((((((((((((((((((((((.(((((((...))))))).))).)))))))))))))))).))))))))))).)))))))))))))

Structure

        u     u  U         -                -   c       g 
gagggugu gaugu gc GACAGGAGA UAGAGAGCACaugcgc uca augcaga  
|||||||| ||||| || ||||||||| |||||||||||||||| ||| ||||||| g
cuuccgca uuaua UG CUGUCCUCU AUCUCUCGuguaugug agu ugcgucu  
        -     C  -         U                g   u       g 

Annotation confidence High

Genome context

MA_9572854: 5183-5293 [-]

Mature pab-miR156aa-5p

• Accession: MIMAT0044684
• Description: Picea abies pab-miR156aa-5p mature miRNA
• Sequence: 18 - UGACAGGAGAUAGAGAGCAC - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR156aa-3p

• Accession: MIMAT0057458
• Description: Picea abies pab-miR156aa-3p mature miRNA
• Sequence: 78 - GCUCUCUAUUCUCCUGUCGUC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918