Stem-loop pab-MIR159a

Accession

MI0036587

Description

Picea abies pab-MIR159a precursor miRNA

Literature search

3 open access papers mention pab-MIR159a
(7 sentences)

Sequence

145705 reads, 6951.0 reads per million, 97 experiments

ugguagaguuccuuuuauaccaaucaaggccugugcaaaagugauccGACUGCCGAUUUAUGCAUCCUucugcccugccaguguucguuguuacaggcccgauuucauugcagguuaguggugugcauaaggcgggaguuguauugauuuuguguugcccucguUUGGUUUGAAGGGAGCUCUACug
.((((((((((((((((.(((((.(.(((.(..(((((((..(((.(((((.(((..((((((((.((.(((.(((((.((((.(((..(((...))).)))...))))))))).))).)).))))))))..))).))))).)))..)))))))..).))).).))))).)))))))))))))))).

Structure

u                u     u a   c ug       gu   c     G   AU        C  u   c     c    --u   uu   a 
 gguagaguuccuuuua accaa c agg c  ugcaaaa  gau cGACU CCG  UUAUGCAU CU cug ccugc agug   ucg  guu  
 |||||||||||||||| ||||| | ||| |  |||||||  ||| ||||| |||  |||||||| || ||| ||||| ||||   |||  ||| c
 uCAUCUCGAGGGAAGU UGGUU g ucc g  guguuuu  uua guuga ggc  aauacgug gg gau ggacg uuac   agc  cgg  
g                U     u c   c uu       ag   u     g   gg        u  u   u     -    uuu   -c   a 

Annotation confidence Low

Genome context

MA_10331: 72389-72575 [-]

Mature pab-miR159a-5p

• Accession: MIMAT0057459
• Description: Picea abies pab-miR159a-5p mature miRNA
• Sequence: 48 - GACUGCCGAUUUAUGCAUCCU - 68
• Evidence: experimental ; unknown

Mature pab-miR159a-3p

• Accession: MIMAT0044685
• Description: Picea abies pab-miR159a-3p mature miRNA
• Sequence: 165 - UUGGUUUGAAGGGAGCUCUAC - 185
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918