Stem-loop pab-MIR159c

Accession

MI0036589

Description

Picea abies pab-MIR159c precursor miRNA

Literature search

2 open access papers mention pab-MIR159c
(6 sentences)

Sequence

73953 reads, 4231.0 reads per million, 102 experiments

cggggcgcucccuucaguccaaccaagggcuguguggggaugauucAACUGCUGGUUCAUGGAUUCUauugucuugucauguugguggagcuggcuagauaauggugugcaugacacaggaguuguauugccaccaugcgacuuuuaCUUGGAUUGAAGGGAGCUCCucg
(((((.((((((((((((((((..(((((.(((((((((.((((.(((((.(((..(((((.((.(((((((((.((((.(((.....))))))).))))))))).)).)))))..))).))))).)))))).))))))).)))))..)))))))))))))))).)))))

Structure

     c                cc     c       -  a    u     G   GU     G  U         u    u   g 
cgggg gcucccuucaguccaa  aaggg ugugugg gg ugau cAACU CUG  UCAUG AU CUauugucu guca guu g
||||| ||||||||||||||||  ||||| ||||||| || |||| ||||| |||  ||||| || ||||||||| |||| ||| u
gcuCC CGAGGGAAGUUAGGUU  uuuuc gcguacc cc guua guuga gac  aguac ug gguaauaga cggu cga g
     U                Ca     a       a  -    u     g   ac     g  u         u    -   g 

Annotation confidence Low

Genome context

MA_9003617: 4769-4938 [+]

Mature pab-miR159c-5p

• Accession: MIMAT0057461
• Description: Picea abies pab-miR159c-5p mature miRNA
• Sequence: 47 - AACUGCUGGUUCAUGGAUUCU - 67
• Evidence: experimental ; unknown

Mature pab-miR159c-3p

• Accession: MIMAT0044687
• Description: Picea abies pab-miR159c-3p mature miRNA
• Sequence: 148 - CUUGGAUUGAAGGGAGCUCC - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918