Stem-loop pab-MIR160d

Accession

MI0036593

Description

Picea abies pab-MIR160d precursor miRNA

Literature search

1 open access papers mention pab-MIR160d
(1 sentences)

Sequence

1749 reads, 113.0 reads per million, 85 experiments

gguagagugUGCCUGGCUCCCUGUAUGCCAcuuacaaaucuaauccucauuggauuggcuuuauaggugGCGUGCAGGGAGACAAGCACAcuuucu
((.(((((((((.((.((((((((((((((((((.(((.(((((((.....))))))).))).)))))))))))))))))).)).)))))))))))

Structure

  u         C  G                  c   u       u 
gg agagugUGC UG CUCCCUGUAUGCCAcuua aaa cuaaucc c
|| ||||||||| || |||||||||||||||||| ||| ||||||| a
uc uuucACACG AC GAGGGACGUGCGguggau uuu gguuagg u
  -         A  A                  a   c       u 

Annotation confidence High

Genome context

MA_532021: 1527-1622 [-]

Mature pab-miR160d-5p

• Accession: MIMAT0044691
• Description: Picea abies pab-miR160d-5p mature miRNA
• Sequence: 10 - UGCCUGGCUCCCUGUAUGCCA - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR160d-3p

• Accession: MIMAT0057462
• Description: Picea abies pab-miR160d-3p mature miRNA
• Sequence: 70 - GCGUGCAGGGAGACAAGCACA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918