Stem-loop pab-MIR160e

Accession

MI0036594

Description

Picea abies pab-MIR160e precursor miRNA

Literature search

1 open access papers mention pab-MIR160e
(1 sentences)

Sequence

2832 reads, 144.0 reads per million, 87 experiments

ucaaaCUGCCUGGCUCCCUGUAUGCCaucuguguagcuuaucuggacauugauaugcgcauaguuggCAUACAGGGAUCCAUGCAGAAguc
.....((((.(((.(((((((((((((.((((((.((.((((........)))).)))))))).))))))))))))).))).)))).....

Structure

ucaaa    C   C             u      a  u    ugg 
     CUGC UGG UCCCUGUAUGCCa cugugu gc uauc   a
     |||| ||| ||||||||||||| |||||| || ||||    
     GACG ACC AGGGACAUACggu gauacg cg auag   c
cugAA    U   U             u      -  u    uua 

Annotation confidence High

Genome context

MA_744037: 5846-5936 [-]

Mature pab-miR160e-5p

• Accession: MIMAT0044692
• Description: Picea abies pab-miR160e-5p mature miRNA
• Sequence: 6 - CUGCCUGGCUCCCUGUAUGCC - 26
• Evidence: experimental ; Illumina [1]

Mature pab-miR160e-3p

• Accession: MIMAT0057463
• Description: Picea abies pab-miR160e-3p mature miRNA
• Sequence: 68 - CAUACAGGGAUCCAUGCAGAA - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918