Stem-loop pab-MIR162a

Accession

MI0036596

Description

Picea abies pab-MIR162a precursor miRNA

Literature search

1 open access papers mention pab-MIR162a
(2 sentences)

Sequence

10297 reads, 509.0 reads per million, 98 experiments

gcagugaggcuGGAAGCAGGGUUUUAUCGAUCccuuccugcuagugcauccaggguuuagauuuuaccgcaguuaacaggcaugggUCGAUAAACCUCUGCAUCCGGcuuguucccugu
((((.(((((((((.((((((.(((((((((((...((((.((((((......(((.........)))))).))).))))...))))))))))).)))))).)))))))...)).))))

Structure

    u  ---       A      U           cuu    c   -   auccag   uua 
gcag ga   ggcuGGA GCAGGG UUUAUCGAUCc   ccug uag ugc      ggu   g
|||| ||   ||||||| |||||| |||||||||||   |||| ||| |||      |||   a
uguc cu   ucGGCCU CGUCUC AAAUAGCUggg   ggac auu acg      cca   u
    c  ugu       A      C           uac    a   g   ------   uuu 

Annotation confidence High

Genome context

MA_230619: 2413-2531 [-]

Mature pab-miR162a-5p

• Accession: MIMAT0057464
• Description: Picea abies pab-miR162a-5p mature miRNA
• Sequence: 12 - GGAAGCAGGGUUUUAUCGAUC - 32
• Evidence: experimental ; unknown

Mature pab-miR162a-3p

• Accession: MIMAT0044694
• Description: Picea abies pab-miR162a-3p mature miRNA
• Sequence: 87 - UCGAUAAACCUCUGCAUCCGG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918