Stem-loop pab-MIR162b

Accession

MI0036597

Description

Picea abies pab-MIR162b precursor miRNA

Literature search

1 open access papers mention pab-MIR162b
(2 sentences)

Sequence

16910 reads, 607.0 reads per million, 99 experiments

gggcgauuucagacgcuuggcagccuGGAUGCAAAGGGUUUACCGACCauggccacgggccgcuuugucucggUCGAUAAGCCUCUGCAUCCAGauuguuuggaaucuguugcuu
.(((((...((((..((.(((((.(((((((((..(((((((.(((((.(((((...))))).........))))).))))))).))))))))).))))).))..))))))))).

Structure

g     uuu    cg  u     c         AA       C     --------a     a 
 ggcga   caga  cu ggcag cuGGAUGCA  GGGUUUA CGACC         uggcc  
 |||||   ||||  || ||||| |||||||||  ||||||| |||||         ||||| c
 ucguu   gucu  gg uuguu GACCUACGU  UCCGAAU GCUgg         gccgg  
u     ---    aa  u     a         -C       A     cucuguuuc     g 

Annotation confidence High

Genome context

MA_47140: 10712-10826 [-]

Mature pab-miR162b-5p

• Accession: MIMAT0057465
• Description: Picea abies pab-miR162b-5p mature miRNA
• Sequence: 27 - GGAUGCAAAGGGUUUACCGACC - 48
• Evidence: experimental ; unknown

Mature pab-miR162b-3p

• Accession: MIMAT0044695
• Description: Picea abies pab-miR162b-3p mature miRNA
• Sequence: 74 - UCGAUAAGCCUCUGCAUCCAG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918