Stem-loop pab-MIR162c

Accession

MI0036598

Description

Picea abies pab-MIR162c precursor miRNA

Literature search

1 open access papers mention pab-MIR162c
(2 sentences)

Sequence

16912 reads, 607.0 reads per million, 99 experiments

ggcgggcgauuucagacgcuuggcagccuGGAUGCAAAGGGUUUACCGACCauggccacgggccgcuuugucucggUCGAUAAGCCUCUGCAUCCAGauuguuuggaaucuguugcuucuc
(((((..(((((((((((((....)))(((((((((..(((((((.(((((.(((((...))))).........))))).))))))).)))))))))...))))))))))..)))))....

Structure

----     gc          gcuuggcagc         AA       C     --------a     a 
    ggcgg  gauuucagac          cuGGAUGCA  GGGUUUA CGACC         uggcc  
    |||||  ||||||||||          |||||||||  ||||||| |||||         ||||| c
    ucguu  cuaagguuug          GACCUACGU  UCCGAAU GCUgg         gccgg  
cucu     gu          -------uua         -C       A     cucuguuuc     g 

Annotation confidence High

Genome context

MA_9835690: 378-498 [+]

Mature pab-miR162c-5p

• Accession: MIMAT0057466
• Description: Picea abies pab-miR162c-5p mature miRNA
• Sequence: 30 - GGAUGCAAAGGGUUUACCGACC - 51
• Evidence: experimental ; unknown

Mature pab-miR162c-3p

• Accession: MIMAT0044696
• Description: Picea abies pab-miR162c-3p mature miRNA
• Sequence: 77 - UCGAUAAGCCUCUGCAUCCAG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918