Stem-loop pab-MIR164a

Accession

MI0036599

Description

Picea abies pab-MIR164a precursor miRNA

Literature search

1 open access papers mention pab-MIR164a
(1 sentences)

Sequence

29150 reads, 903.0 reads per million, 66 experiments

guUGGAGAAGCAGGGCACGUGCGagcugaggcugccuuucuggccuggccuggccucgcuuacaguaaguacucgggccucgCACGUGCUCCCCUUCUCCAAC
((((((((((..((((((((((((....((((((((.....)))..)))))((((.((..(((.....)))..))))))))))))))))))..))))))))))

Structure

          CA            gcugaggcugccuuucuggccuggccu    u  cu   a 
guUGGAGAAG  GGGCACGUGCGa                           ggcc cg  uac g
||||||||||  ||||||||||||                           |||| ||  ||| u
CAACCUCUUC  CUCGUGCACgcu                           ccgg gc  aug a
          CC            ---------------------------    -  uc   a 

Annotation confidence Medium

Genome context

MA_27057: 27621-27723 [+]

Mature pab-miR164a-5p

• Accession: MIMAT0057467
• Description: Picea abies pab-miR164a-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCG - 23
• Evidence: experimental ; unknown

Mature pab-miR164a-3p

• Accession: MIMAT0044697
• Description: Picea abies pab-miR164a-3p mature miRNA
• Sequence: 83 - CACGUGCUCCCCUUCUCCAAC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918