Stem-loop pab-MIR166e

Accession

MI0036603

Description

Picea abies pab-MIR166e precursor miRNA

Literature search

1 open access papers mention pab-MIR166e
(3 sentences)

Sequence

1233884 reads, 49841.0 reads per million, 102 experiments

cagagacaccagagcugugcuguguggAGUGAAGCCUGGCUCAAGAUUauuugguggcucuuuuggucuccagaaaUCUCGGACCAGGCUUCAUUCCuaccauuacaacucuuuuug
..........((((.((((.((.((((((((((((((((.((.(((((.(((((.((((.....)))).)))))))))).)).)))))))))))))).)))).)))).)))).....

Structure

cagagacacc    c    c  u  -              C  A     a     u    c 
          agag ugug ug gu ggAGUGAAGCCUGG UC AGAUU uuugg ggcu u
          |||| |||| || || |||||||||||||| || ||||| ||||| |||| u
          ucuc acau ac ca CCUUACUUCGGACC GG UCUaa agacc cugg u
-----guuuu    a    u  -  u              A  C     -     u    u 

Annotation confidence High

Genome context

MA_490357: 6252-6368 [+]

Mature pab-miR166e-5p

• Accession: MIMAT0057469
• Description: Picea abies pab-miR166e-5p mature miRNA
• Sequence: 28 - AGUGAAGCCUGGCUCAAGAUU - 48
• Evidence: experimental ; unknown

Mature pab-miR166e-3p

• Accession: MIMAT0044701
• Description: Picea abies pab-miR166e-3p mature miRNA
• Sequence: 77 - UCUCGGACCAGGCUUCAUUCC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918