Stem-loop pab-MIR166f

Accession

MI0036604

Description

Picea abies pab-MIR166f precursor miRNA

Literature search

1 open access papers mention pab-MIR166f
(3 sentences)

Sequence

1515212 reads, 49777.0 reads per million, 102 experiments

ggaagaccucaauguugauugaggGGAAUGUUGUCUGGCUCGACUUcauccggauuuggguuccaauguucggaugccgUCGGACCAGGCUUCAUUCCCCccaaucggagcucuucc
((((((.(((.....((((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).))))))))).))))))

Structure

      c   aaugu      a        UU      C     UU         -    g 
ggaaga cuc     ugauug ggGGAAUG  GUCUGG UCGAC  cauccggau uugg  
|||||| |||     |||||| ||||||||  |||||| |||||  ||||||||| |||| u
ccuucu gag     gcuaac CCCCUUAC  CGGACC GGCUg  guaggcuug aacc  
      c   -----      c        UU      A     cc         u    u 

Annotation confidence High

Genome context

MA_103973: 20565-20681 [+]

Mature pab-miR166f-5p

• Accession: MIMAT0057470
• Description: Picea abies pab-miR166f-5p mature miRNA
• Sequence: 25 - GGAAUGUUGUCUGGCUCGACUU - 46
• Evidence: experimental ; unknown

Mature pab-miR166f-3p

• Accession: MIMAT0044702
• Description: Picea abies pab-miR166f-3p mature miRNA
• Sequence: 80 - UCGGACCAGGCUUCAUUCCCC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918