Stem-loop pab-MIR166g

Accession

MI0036605

Description

Picea abies pab-MIR166g precursor miRNA

Literature search

1 open access papers mention pab-MIR166g
(3 sentences)

Sequence

3322731 reads, 123026.0 reads per million, 102 experiments

gguuugaggGGAAUGUUGUCUGGCUCGAGGccauccugaaaauaguccccccgccccuuggggguuuucggaugccgUCGGACCAGGCUUCAUUCCCCUcaaauu
.((((((((((((((..((((((.(((((((.((((.(((((.....((((((.....)))))))))))))))))).)))).))))))..)))))))))))))).

Structure

g              UU      C    -   c    u     uaguc      c 
 guuugaggGGAAUG  GUCUGG UCGA GGc aucc gaaaa     cccccg c
 ||||||||||||||  |||||| |||| ||| |||| |||||     |||||| c
 uaaacUCCCCUUAC  CGGACC GGCU ccg uagg cuuuu     gggggu c
u              UU      A    g   -    -     -----      u 

Annotation confidence High

Genome context

MA_10435792: 5715-5819 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR166g

Mature pab-miR166g-5p

• Accession: MIMAT0057471
• Description: Picea abies pab-miR166g-5p mature miRNA
• Sequence: 10 - GGAAUGUUGUCUGGCUCGAGG - 30
• Evidence: experimental ; unknown

Mature pab-miR166g-3p

• Accession: MIMAT0044703
• Description: Picea abies pab-miR166g-3p mature miRNA
• Sequence: 78 - UCGGACCAGGCUUCAUUCCCCU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918