Stem-loop pab-MIR166h

Accession

MI0036606

Description

Picea abies pab-MIR166h precursor miRNA

Literature search

1 open access papers mention pab-MIR166h
(3 sentences)

Sequence

1501805 reads, 47379.0 reads per million, 102 experiments

ggGGAAUGUUGUCUGGCUCGAGGucauucagauuugaagaugauucuucgagcugagugacgUCGGACCAGGCUUCAUUCCCC
((((((((..((((((.((((.(((((((((.((((((((....))))))))))))))))).)))).))))))..))))))))

Structure

        UU      C    G         a        u 
ggGGAAUG  GUCUGG UCGA Gucauucag uuugaaga g
||||||||  |||||| |||| ||||||||| ||||||||  
CCCCUUAC  CGGACC GGCU cagugaguc gagcuucu a
        UU      A    g         -        u 

Annotation confidence High

Genome context

MA_10435792: 6681-6763 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR166h

Mature pab-miR166h-5p

• Accession: MIMAT0057472
• Description: Picea abies pab-miR166h-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGCUCGAGG - 23
• Evidence: experimental ; unknown

Mature pab-miR166h-3p

• Accession: MIMAT0044704
• Description: Picea abies pab-miR166h-3p mature miRNA
• Sequence: 63 - UCGGACCAGGCUUCAUUCCCC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918