Stem-loop pab-MIR167a

Accession

MI0036609

Description

Picea abies pab-MIR167a precursor miRNA

Literature search

1 open access papers mention pab-MIR167a
(3 sentences)

Sequence

10033 reads, 747.0 reads per million, 97 experiments

cgguuucuguggguaggagugguUGAAGCUGCCAGCAUGAUCUGGuuagcuauucaugauacucaugaccaggcaggcucaucuggaucuugccAGAUCAUGCGGCAGUUUCACCcgcuaaugcuggcacug
.......(((.((((..(((((.((((((((((.((((((((((((.((....((((((...))))))(((((........)))))..)).)))))))))))))))))))))).)))))..)))).)))...

Structure

cgguuuc   g    gg     u          A            u  ----------------cuau      u 
       ugu ggua  agugg UGAAGCUGCC GCAUGAUCUGGu ag                    ucauga  
       ||| ||||  ||||| |||||||||| |||||||||||| ||                    |||||| a
       acg ucgu  ucgcC ACUUUGACGG CGUACUAGAccg uc                    aguacu  
----guc   g    aa     C          -            u  uaggucuacucggacggacc      c 

Annotation confidence High

Genome context

MA_120308: 20968-21099 [-]

Mature pab-miR167a-5p

• Accession: MIMAT0057475
• Description: Picea abies pab-miR167a-5p mature miRNA
• Sequence: 24 - UGAAGCUGCCAGCAUGAUCUGG - 45
• Evidence: experimental ; unknown

Mature pab-miR167a-3p

• Accession: MIMAT0044707
• Description: Picea abies pab-miR167a-3p mature miRNA
• Sequence: 95 - AGAUCAUGCGGCAGUUUCACC - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918