Stem-loop pab-MIR167b

Accession

MI0036610

Description

Picea abies pab-MIR167b precursor miRNA

Literature search

1 open access papers mention pab-MIR167b
(3 sentences)

Sequence

17356 reads, 1372.0 reads per million, 96 experiments

cuuguccgguggaacagcUGAAGCUGCCAGCAUGAUCUGGugcggugguuuuugaaauuuaaaccaccAGAUCAUGUGGUAGCUUCAGCuucucccucauggacaug
..((((((..(((..((((((((((((((.(((((((((((.....(((((.........))))))))))))))))))))))))))))))..)))....))))))..

Structure

cu      --gu   ac              G           gcggu     uug 
  uguccg    gga  agcUGAAGCUGCCA CAUGAUCUGGu     gguuu   a
  ||||||    |||  |||||||||||||| |||||||||||     |||||   a
  acaggu    ccu  uCGACUUCGAUGGU GUACUAGAcca     ccaaa   a
gu      acuc   cu              -           -----     uuu 

Annotation confidence High

Genome context

MA_1173: 31114-31220 [+]

Mature pab-miR167b-5p

• Accession: MIMAT0044708
• Description: Picea abies pab-miR167b-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUGG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR167b-3p

• Accession: MIMAT0057476
• Description: Picea abies pab-miR167b-3p mature miRNA
• Sequence: 69 - AGAUCAUGUGGUAGCUUCAGC - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918