Stem-loop pab-MIR168b

Accession

MI0036612

Description

Picea abies pab-MIR168b precursor miRNA

Literature search

1 open access papers mention pab-MIR168b
(1 sentences)

Sequence

18021 reads, 444.0 reads per million, 99 experiments

ucauuuugggcucuaguUCGAUUGGUGCAGAUCGGGAAucgccugcggagauaaagagccuggagaucaagaggacgauuCCCCACCUGCAUCAAUUGAACgggggccaaagauga
(((((((.((((((.(((((((((((((((...(((((((((((...((..(..((...))..)..))...))).))))))))...))))))))))))))).)))))).)))))))

Structure

       g      a               AUC        -   gcg  ga aa  a 
ucauuuu ggcucu guUCGAUUGGUGCAG   GGGAAucg ccu   ga  u  ag  
||||||| |||||| |||||||||||||||   |||||||| |||   ||  |  || g
aguagaa ccgggg CAAGUUAACUACGUC   CCCuuagc gga   cu  a  uc  
       a      g               CAC        a   gaa  ag gg  c 

Annotation confidence High

Genome context

MA_181254: 21858-21973 [+]

Mature pab-miR168b-5p

• Accession: MIMAT0044710
• Description: Picea abies pab-miR168b-5p mature miRNA
• Sequence: 18 - UCGAUUGGUGCAGAUCGGGAA - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR168b-3p

• Accession: MIMAT0057478
• Description: Picea abies pab-miR168b-3p mature miRNA
• Sequence: 81 - CCCCACCUGCAUCAAUUGAAC - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918