Stem-loop pab-MIR169a

Accession

MI0036613

Description

Picea abies pab-MIR169a precursor miRNA

Sequence

9614 reads, 243.0 reads per million, 60 experiments

agagacagagaguguuacuCAGCCAAGAAUGACUUGCCCGcauacuguuguggauuauuguuccacaaacgcauuacagucuUGCGGGCAAGUUGUUCUUGGaaaagcgucccucucugcuuu
.(((.(((((((.(...((...((((((((((((((((((((.(((((((((((.......))))))........)))))..))))))))))))))))))))...))...).)))))))))).

Structure

a   a       u uua  CAG                    -u     --------      uu 
 gag cagagag g   cu   CCAAGAAUGACUUGCCCGca  acugu        ugugga  a
 ||| ||||||| |   ||   ||||||||||||||||||||  |||||        ||||||  u
 uuc gucucuc c   ga   GGUUCUUGUUGAACGGGCGU  ugaca        acaccu  u
u   -       c ugc  aaa                    uc     uuacgcaa      ug 

Annotation confidence Medium

Genome context

MA_10427054: 3813-3935 [-]

Mature pab-miR169a-5p

• Accession: MIMAT0044711
• Description: Picea abies pab-miR169a-5p mature miRNA
• Sequence: 20 - CAGCCAAGAAUGACUUGCCCG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR169a-3p

• Accession: MIMAT0057479
• Description: Picea abies pab-miR169a-3p mature miRNA
• Sequence: 83 - UGCGGGCAAGUUGUUCUUGG - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918