miRBase entry: pab-MIR169c

Stem-loop pab-MIR169c


Accession
MI0036615
Description
Picea abies pab-MIR169c precursor miRNA


Sequence

9739 reads, 254.0 reads per million, 57 experiments
gcaugucgaggcagauagccauacuCAGCCAAGAAUGACUUGCCCGcauacuguuaugaaguauuguuccacaugcgcauuucaguccugcgGGUAGGUUAUUCUUGGCAAAGcaucgcuaucuccuuuuucaugc
(((((..((((.(((((((.((.((..(((((((((((((((((((((.((((..(((..((((........)))).)))..))))..)))))))))))))))))))))..)).)).)))))))))))...)))))

Structure
     -uc    c       c  a  CA                     -u    uu   aa    ugu 
gcaug   gagg agauagc au cu  GCCAAGAAUGACUUGCCCGca  acug  aug  guau   u
|||||   |||| ||||||| || ||  |||||||||||||||||||||  ||||  |||  ||||    
cguac   uucc ucuaucg ua GA  CGGUUCUUAUUGGAUGGgcgu  ugac  uac  cgua   c
     uuu    -       c  c  AA                     cc    uu   -g    cac 


Annotation confidence High
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Genome context
MA_8387092: 2400-2535 [+]

Database links

Mature pab-miR169c-5p

Accession MIMAT0044713
Description Picea abies pab-miR169c-5p mature miRNA
Sequence 26 - CAGCCAAGAAUGACUUGCCCG - 46
Evidence experimental
Illumina [1]

Mature pab-miR169c-3p

Accession MIMAT0057481
Description Picea abies pab-miR169c-3p mature miRNA
Sequence 93 - GGUAGGUUAUUCUUGGCAAAG - 113
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918