Stem-loop pab-MIR169d

Accession

MI0036616

Description

Picea abies pab-MIR169d precursor miRNA

Sequence

11985 reads, 288.0 reads per million, 70 experiments

ugcauguagaggcagagaguguuacuCAGCCAAGAAUGACUUGCCCGcauacuguugaggauuaugguuccgaauacguauugcaggcuugugGGUAGGUUGUUCUUGGCAGUGcaucucucucuucuuuucaugcg
.(((((.(((((.(((((((((.(((..(((((((((((((((((((((..((((...(((.......)))...........))))...))))))))))))))))))))))))))).)))))))))))...))))).

Structure

u     --u     c      -   u   CA                     -ua    --------uga   uu 
 gcaug   agagg agagag ugu acu  GCCAAGAAUGACUUGCCCGca   cugu           gga  a
 |||||   ||||| |||||| ||| |||  |||||||||||||||||||||   ||||           |||  u
 cguac   ucuuc ucucuc acG UGA  CGGUUCUUGUUGGAUGGgugu   gacg           ccu  g
g     uuu     -      u   -   --                     ucg    uuaugcauaag   ug 

Annotation confidence High

Genome context

MA_18559: 31384-31520 [+]

Mature pab-miR169d-5p

• Accession: MIMAT0044714
• Description: Picea abies pab-miR169d-5p mature miRNA
• Sequence: 27 - CAGCCAAGAAUGACUUGCCCG - 47
• Evidence: experimental ; Illumina [1]

Mature pab-miR169d-3p

• Accession: MIMAT0057482
• Description: Picea abies pab-miR169d-3p mature miRNA
• Sequence: 94 - GGUAGGUUGUUCUUGGCAGUG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918