Stem-loop pab-MIR171a

Accession

MI0036618

Description

Picea abies pab-MIR171a precursor miRNA

Literature search

2 open access papers mention pab-MIR171a
(2 sentences)

Sequence

2218 reads, 241.0 reads per million, 95 experiments

cgagccgucuugAGAUAUUGGAGCGGUUCAACCagacaacauuauuaaaaagaauguaauuuuguuguucguUUGAGCCGUGCCAAUAUCGCAcuagacuugcuug
(((((.((((((.((((((((.(((((((((.(.(((((((..((((.........))))..))))))).).))))))))).)))))))).))..))))..)))))

Structure

     -c    --  A        A         C a       uu    aaa 
cgagc  gucu  ug GAUAUUGG GCGGUUCAA C gacaaca  auua   a
|||||  ||||  || |||||||| ||||||||| | |||||||  ||||   g
guucg  caga  AC CUAUAACC UGCCGAGUU g uuguugu  uaau   a
     uu    uc  G        G         u c       uu    gua 

Annotation confidence Medium

Genome context

MA_119585: 15348-15453 [-]

Mature pab-miR171a-5p

• Accession: MIMAT0057484
• Description: Picea abies pab-miR171a-5p mature miRNA
• Sequence: 13 - AGAUAUUGGAGCGGUUCAACC - 33
• Evidence: experimental ; unknown

Mature pab-miR171a-3p

• Accession: MIMAT0044716
• Description: Picea abies pab-miR171a-3p mature miRNA
• Sequence: 73 - UUGAGCCGUGCCAAUAUCGCA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918