Stem-loop pab-MIR319a

Accession

MI0036623

Description

Picea abies pab-MIR319a precursor miRNA

Literature search

1 open access papers mention pab-MIR319a
(3 sentences)

Sequence

127778 reads, 4281.0 reads per million, 99 experiments

gcaguccuggacaggaauugaaugaagAGAGCUUUCUUCCGUCCAACCGaggagguuuauaggcuauuucagcugcugacuuaugcaaucguaugccaugcugaugaugagaaugguggcagcagcgcaaccgucugcaugaugcaggagcagaagagucuggauuucucuucucUUGGACUGAAGGGAGCUCCCUcucaaauucccuuuuucaaucugu
((((...((((..((((((...(((((.(((((((((((.((((((..(((((((....((((((.((((.(((.(((..(((((((..((..(((..(((((.(.((.......)).))))))..)))..))..)))))))..))).))).))))))))))....)))))))..)))))).))))))))))).)).)))))))))....))))..))))

Structure

    ucc    --ca      gaa   -  A           C      CC       uuua      a    a   g   ac       au  ua   ca     a g  ga 
gcag   ugga    ggaauu   uga ag GAGCUUUCUUC GUCCAA  Gaggagg    uaggcu uuuc gcu cug  uuaugca  cg  ugc  ugcug u au  g
||||   ||||    ||||||   ||| || ||||||||||| ||||||  |||||||    |||||| |||| ||| |||  |||||||  ||  |||  ||||| | ||  a
uguc   acuu    ccuuaa   acu UC CUCGAGGGAAG CAGGUU  cuucucu    gucuga gaag cga gac  aguacgu  gc  acg  acgac g ug  a
    -ua    uuuc      ---   c  C           U      cu       uuag      -    a   g   gu       cu  ca   cg     - g  gu 

Annotation confidence High

Genome context

MA_102525: 3536-3755 [-]

Mature pab-miR319a-5p

• Accession: MIMAT0057485
• Description: Picea abies pab-miR319a-5p mature miRNA
• Sequence: 28 - AGAGCUUUCUUCCGUCCAACCG - 49
• Evidence: experimental ; unknown

Mature pab-miR319a-3p

• Accession: MIMAT0044721
• Description: Picea abies pab-miR319a-3p mature miRNA
• Sequence: 176 - UUGGACUGAAGGGAGCUCCCU - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918