Stem-loop pab-MIR319c

Accession

MI0036625

Description

Picea abies pab-MIR319c precursor miRNA

Literature search

1 open access papers mention pab-MIR319c
(3 sentences)

Sequence

96508 reads, 3113.0 reads per million, 100 experiments

aagcccagaugGGAGCUUCCUUAAGUCCAAAGgacguccaaauuuuuuacagggauagcucgaauccuUUGGACUGAAGGGAGCUCCCaucuggguuu
((((((((((((((((((((((.((((((((((((((((.............))).....))..))))))))))).))))))))))))))))))))))

Structure

                      A           --  -----   aaauu 
aagcccagaugGGAGCUUCCUU AGUCCAAAGga  cg     ucc     u
|||||||||||||||||||||| |||||||||||  ||     |||     u
uuugggucuaCCCUCGAGGGAA UCAGGUUuccu  gc     agg     u
                      G           aa  ucgau   gacau 

Annotation confidence High

Genome context

MA_104055: 24902-24999 [+]

Mature pab-miR319c-5p

• Accession: MIMAT0057486
• Description: Picea abies pab-miR319c-5p mature miRNA
• Sequence: 12 - GGAGCUUCCUUAAGUCCAAAG - 32
• Evidence: experimental ; unknown

Mature pab-miR319c-3p

• Accession: MIMAT0044723
• Description: Picea abies pab-miR319c-3p mature miRNA
• Sequence: 69 - UUGGACUGAAGGGAGCUCCC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918