Stem-loop pab-MIR319f

Accession

MI0036628

Description

Picea abies pab-MIR319f precursor miRNA

Literature search

1 open access papers mention pab-MIR319f
(3 sentences)

Sequence

197613 reads, 5853.0 reads per million, 100 experiments

cagauuugauuuuauugagugagaaggGAGUUCUCUUCAGUCCACUCaaagaugguccuuggccugaagcagcugccgacucguucaugcgccugcuguaucucguacuggcgaagaggagaagcgaucgagauaaauauagagauacuguagauguaugaacgaugcgggagcugauuucgcccgagggcugccauuacUUGGACUGAAGGGAGCUCCCuucccaaugaguuuucug
((((...((.(((((((.(...((((((((((((((((((((((.........(((((((((..((((((((((.(((..(((((((((((.((((.(((((((.......(((...(......)..)))...........))))))).)))).)))))))))))..))).))))).))))).))))))))).........)))))))))))))))))))))))))))))).))))))

Structure

    uuu  u       a uga                      CUCaaagau         cc     -     g   ac           c    u       ----guacugg   aga ga 
caga   ga uuuauug g   gaaggGAGUUCUCUUCAGUCCA         gguccuugg  ugaag cagcu ccg  ucguucaugcg cugc guaucuc           cga   g  g
||||   || ||||||| |   ||||||||||||||||||||||         |||||||||  ||||| ||||| |||  ||||||||||| |||| |||||||           |||   |   
gucu   uu gaguaac c   cuuCCCUCGAGGGAAGUCAGGU         ucgggagcc  gcuuu gucga ggc  agcaaguaugu gaug cauagag           gcu   c  a
    ---  u       - ---                      Ucauuaccg         -c     a     g   gu           a    u       auauaaauaga   -ag ga 

Annotation confidence High

Genome context

MA_54068: 7735-7972 [-]

Mature pab-miR319f-5p

• Accession: MIMAT0057487
• Description: Picea abies pab-miR319f-5p mature miRNA
• Sequence: 28 - GAGUUCUCUUCAGUCCACUC - 47
• Evidence: experimental ; unknown

Mature pab-miR319f-3p

• Accession: MIMAT0044726
• Description: Picea abies pab-miR319f-3p mature miRNA
• Sequence: 201 - UUGGACUGAAGGGAGCUCCC - 220
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918