Stem-loop pab-MIR390a

Accession

MI0036632

Description

Picea abies pab-MIR390a precursor miRNA

Literature search

1 open access papers mention pab-MIR390a
(2 sentences)

Sequence

13759 reads, 1288.0 reads per million, 91 experiments

ucagcgaaaguaugguggauuugcaAAGCUCAGGAGGGAUAGCGCCcaugguaugugaacugccucuugcagccaugagaCGCUAUCCAUCCUGAGUUUUUugacuucucccugcuaucugg
.....((.((((.((.(((.(((.(((((((((((.(((((((((.((((((.(((((........))))))))))).).)))))))).))))))))))).))).))).)).)))).))...

Structure

ucagc  a    u  u   u   c           G        - C      a     acu 
     ga agua gg gga uug aAAGCUCAGGA GGAUAGCG C cauggu uguga   g
     || |||| || ||| ||| ||||||||||| |||||||| | |||||| |||||    
     cu ucgu cc cuu agu UUUUGAGUCCU CCUAUCGC g guaccg acguu   c
--ggu  a    c  u   c   U           A        a a      -     cuc 

Annotation confidence High

Genome context

MA_127009: 12786-12907 [-]

Mature pab-miR390a-5p

• Accession: MIMAT0044730
• Description: Picea abies pab-miR390a-5p mature miRNA
• Sequence: 26 - AAGCUCAGGAGGGAUAGCGCC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR390a-3p

• Accession: MIMAT0057489
• Description: Picea abies pab-miR390a-3p mature miRNA
• Sequence: 81 - CGCUAUCCAUCCUGAGUUUUU - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918