Stem-loop pab-MIR390b

Accession

MI0036633

Description

Picea abies pab-MIR390b precursor miRNA

Literature search

1 open access papers mention pab-MIR390b
(2 sentences)

Sequence

16267 reads, 1803.0 reads per million, 94 experiments

ggcaugauggaauuauaAAGCUCAGGAGGGAUAGCGCCcgcugcaagacacgcccguaucucaaguggCGCUAUCCAUCCUGGGCUUCAUaauuucuuuauacc
((.((((.((((((((.((((((((((.((((((((((.(((...(((.((....)).)))..))))))))))))).)))))))))).)))))))).)))).))

Structure

  c    u        a          G          c   gca   c  g 
gg auga ggaauuau AAGCUCAGGA GGAUAGCGCC gcu   aga ac c
|| |||| |||||||| |||||||||| |||||||||| |||   ||| ||  
cc uauu cuuuaaUA UUCGGGUCCU CCUAUCGCgg uga   ucu ug c
  a    u        C          A          -   -ac   a  c 

Annotation confidence High

Genome context

MA_3202: 11305-11408 [+]

Mature pab-miR390b-5p

• Accession: MIMAT0044731
• Description: Picea abies pab-miR390b-5p mature miRNA
• Sequence: 18 - AAGCUCAGGAGGGAUAGCGCC - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR390b-3p

• Accession: MIMAT0057490
• Description: Picea abies pab-miR390b-3p mature miRNA
• Sequence: 69 - CGCUAUCCAUCCUGGGCUUCAU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918