Stem-loop pab-MIR394b

Accession

MI0036639

Description

Picea abies pab-MIR394b precursor miRNA

Literature search

1 open access papers mention pab-MIR394b
(1 sentences)

Sequence

1491 reads, 75.0 reads per million, 77 experiments

gccauaaaacuucuuccagagagugCUGGCAUUCUGUCCACCUCCauauacauucucugccacaaucaccaucugcagauuauauggAGGCGGGCGAUAUGCCAAGCaagcucugccaggcguuuuccggc
(((..(((((.(((..(((((..(((((((((..(((((.((((((((((.....(((((..............))))).)))))))))).)))))..))))).))))..)))))..))).)))))..)))

Structure

   au     u   uc     ag    -     UC     A          cauuc     cacaau 
gcc  aaaac ucu  cagag  ugCU GGCAU  UGUCC CCUCCauaua     ucugc      c
|||  ||||| |||  |||||  |||| |||||  ||||| ||||||||||     |||||       
cgg  uuuug gga  gucuc  aCGA CCGUA  GCGGG GGAgguauau     agacg      a
   cc     c   cc     ga    A     UA     C          ----u     ucuacc 

Annotation confidence High

Genome context

MA_588365: 1690-1820 [+]

Mature pab-miR394b-5p

• Accession: MIMAT0044737
• Description: Picea abies pab-miR394b-5p mature miRNA
• Sequence: 26 - CUGGCAUUCUGUCCACCUCC - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR394b-3p

• Accession: MIMAT0057491
• Description: Picea abies pab-miR394b-3p mature miRNA
• Sequence: 88 - AGGCGGGCGAUAUGCCAAGC - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918