Stem-loop pab-MIR394c

Accession

MI0036640

Description

Picea abies pab-MIR394c precursor miRNA

Literature search

1 open access papers mention pab-MIR394c
(1 sentences)

Sequence

1731 reads, 116.0 reads per million, 72 experiments

aaauacuccuuucagagcaugUUGGCAUUCUGUCCACCUCCauauguauuuuaacagcggauaguuuugguucagauguuguugguacuaugaaauuuauggAGGCGGAUUGAAAUGCCAAGCAagcucugaaaggcguuuuu
....((.(((((((((((.(((((((((((.((((.((((((((...((((((...((.(((((.((((...))))..))))).))....)))))).)))))))).)))).).)))))).)))).))))))))))).))....

Structure

aaau  u           a    -      - U    A        ugu      -aca  g     -u    g 
    ac ccuuucagagc ugUU GGCAUU C GUCC CCUCCaua   auuuua    gc gauag  uuug  
    || ||||||||||| |||| |||||| | |||| ||||||||   ||||||    || |||||  |||| u
    ug ggaaagucucg ACGA CCGUAA G UAGG GGAgguau   uaaagu    ug uuguu  agac  
uuuu  c           a    A      A U    C        --u      auca  g     gu    u 

Annotation confidence High

Genome context

MA_81590: 11484-11626 [+]

Mature pab-miR394c-5p

• Accession: MIMAT0044738
• Description: Picea abies pab-miR394c-5p mature miRNA
• Sequence: 22 - UUGGCAUUCUGUCCACCUCC - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR394c-3p

• Accession: MIMAT0057492
• Description: Picea abies pab-miR394c-3p mature miRNA
• Sequence: 103 - AGGCGGAUUGAAAUGCCAAGCA - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918