Stem-loop pab-MIR396e

Accession

MI0036651

Description

Picea abies pab-MIR396e precursor miRNA

Literature search

1 open access papers mention pab-MIR396e
(5 sentences)

Sequence

50303 reads, 2064.0 reads per million, 101 experiments

uucauauuUUCCAGCAGCUUUCUUGAACUUgauuuguuguauguauguaaacuuauaugcuuagaauaauaagaaaGCUCAAGAAAGCUGUGGGAAAacaugga
(((((.((((((.(((((((((((((.(((...(((((.((.(((((((....))))))).)).))))).....))).))))))))))))).)))))).)))))

Structure

     a      A             A   --gau     g  u       a 
uucau uuUUCC GCAGCUUUCUUGA CUU     uuguu ua guaugua a
||||| |||||| ||||||||||||| |||     ||||| || |||||||  
aggua aAAAGG UGUCGAAAGAACU Gaa     aauaa au cguauau c
     c      G             C   agaau     g  u       u 

Annotation confidence Medium

Genome context

MA_696166: 785-888 [-]

Mature pab-miR396e-5p

• Accession: MIMAT0057500
• Description: Picea abies pab-miR396e-5p mature miRNA
• Sequence: 9 - UUCCAGCAGCUUUCUUGAACUU - 30
• Evidence: experimental ; unknown

Mature pab-miR396e-3p

• Accession: MIMAT0044749
• Description: Picea abies pab-miR396e-3p mature miRNA
• Sequence: 77 - GCUCAAGAAAGCUGUGGGAAA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918