Stem-loop pab-MIR396f

Accession

MI0036652

Description

Picea abies pab-MIR396f precursor miRNA

Literature search

1 open access papers mention pab-MIR396f
(5 sentences)

Sequence

566375 reads, 14672.0 reads per million, 73 experiments

gaaucccucuauauuuUCCCACGGCUUUCUUGAACUUgugauucggaucuguucucgauacgaucggccgcggccacuacugaucuucAAGUUCAAGAAAGCCGUGGAAaaauaugacaggauuc
((((((...((((((((.((((((((((((((((((((.((((.(((((((((...)))).))))(((....)))....).))))..)))))))))))))))))))).))))))))...))))))

Structure

      cuc        C                    -u    c --------------    -    c 
gaaucc   uauauuuU CCACGGCUUUCUUGAACUUg  gauu g              gauc uguu  
||||||   |||||||| ||||||||||||||||||||  |||| |              |||| |||| u
cuuagg   guauaaaA GGUGCCGAAAGAACUUGAAc  cuag c              cuag auag  
      aca        A                    uu    u aucaccggcgccgg    c    c 

Annotation confidence High

Genome context

MA_20512: 24807-24931 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR396f

Mature pab-miR396f-5p

• Accession: MIMAT0044750
• Description: Picea abies pab-miR396f-5p mature miRNA
• Sequence: 17 - UCCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396f-3p

• Accession: MIMAT0057501
• Description: Picea abies pab-miR396f-3p mature miRNA
• Sequence: 89 - AAGUUCAAGAAAGCCGUGGAA - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918