Stem-loop pab-MIR396g

Accession

MI0036653

Description

Picea abies pab-MIR396g precursor miRNA

Literature search

1 open access papers mention pab-MIR396g
(5 sentences)

Sequence

1287422 reads, 28304.0 reads per million, 102 experiments

gaaucccgucaugcuuUUCCACAGCUUUCUUGAACUUagugccguggggauuggugugggaacaagccuugaaucagaaacgggguguaauccugccuaaucuacgugcaaagCUCAAGAAAGCUGUGGGAAAagauggcaggguuc
((((((.(((((..(((((((((((((((((((.(((..((((((..(((((((.((((((....((((((.........))))))....)))))))))))))))).)))))).)))))))))))))))))))..))))).))))))

Structure

      c     gc                   A   ag   -   gg       u      acaa      aau 
gaaucc gucau  uuUUCCACAGCUUUCUUGA CUU  ugc cgu  ggauugg guggga    gccuug   c
|||||| |||||  ||||||||||||||||||| |||  ||| |||  ||||||| ||||||    ||||||   a
cuuggg cggua  AAAGGGUGUCGAAAGAACU gaa  acg gca  ucuaauc cguccu    uggggc   g
      a     ga                   C   --   u   --       -      aaug      aaa 

Annotation confidence High

Genome context

MA_1702: 16075-16221 [-]

Mature pab-miR396g-5p

• Accession: MIMAT0044751
• Description: Picea abies pab-miR396g-5p mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396g-3p

• Accession: MIMAT0057502
• Description: Picea abies pab-miR396g-3p mature miRNA
• Sequence: 114 - CUCAAGAAAGCUGUGGGAAA - 133
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918