Stem-loop pab-MIR396i

Accession

MI0036655

Description

Picea abies pab-MIR396i precursor miRNA

Literature search

1 open access papers mention pab-MIR396i
(5 sentences)

Sequence

629022 reads, 13921.0 reads per million, 101 experiments

gaauccuguuauauuuUUCCACGGCUUUCUUGAACUUcacgaucaguacuguuggcagcggucgcauagauaacagauccggaugacaagCUCAAGAAAGCCGUGGGAAAauauagagggauuc
(((((((.(((((((((((((((((((((((((.((((((((((.((.((((((((....)))).))))...)).))))..).)))..)).))))))))))))))))))))))))).)))))))

Structure

       g                         A  --   - --    a  --a    -    a 
gaauccu uuauauuuUUCCACGGCUUUCUUGA CU  Uca c  gauc gu   cugu uggc g
||||||| ||||||||||||||||||||||||| ||  ||| |  |||| ||   |||| ||||  
cuuaggg gauauaAAAGGGUGCCGAAAGAACU ga  agu g  cuag ca   gaua gcug c
       a                         C  ac   a gc    a  aua    c    g 

Annotation confidence High

Genome context

MA_10167861: 48-171 [+]

Mature pab-miR396i-5p

• Accession: MIMAT0044753
• Description: Picea abies pab-miR396i-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396i-3p

• Accession: MIMAT0057504
• Description: Picea abies pab-miR396i-3p mature miRNA
• Sequence: 91 - CUCAAGAAAGCCGUGGGAAA - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918