Stem-loop pab-MIR396j

Accession

MI0036656

Description

Picea abies pab-MIR396j precursor miRNA

Literature search

1 open access papers mention pab-MIR396j
(5 sentences)

Sequence

629585 reads, 14034.0 reads per million, 101 experiments

auauuuUUCCACGGCUUUCUUGAACUUcccgaucgggaguguuggcggcggaucgcaccgcuaacagauccgcauaagaagCUCAAGAAAGCCGUGGGAAAuuau
(((.(((((((((((((((((((.((((.....((((..(((((((((.(.....).)))))))))..)))).....)))).))))))))))))))))))).)))

Structure

   u                   A    ccgau    ag         c g 
aua uuUUCCACGGCUUUCUUGA CUUc     cggg  uguuggcgg g a
||| ||||||||||||||||||| ||||     ||||  ||||||||| | u
uau AAAGGGUGCCGAAAGAACU gaag     gccu  acaaucgcc c c
   u                   C    aauac    ag         a g 

Annotation confidence High

Genome context

MA_10273857: 3696-3800 [-]

Mature pab-miR396j-5p

• Accession: MIMAT0044754
• Description: Picea abies pab-miR396j-5p mature miRNA
• Sequence: 7 - UUCCACGGCUUUCUUGAACUU - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR396j-3p

• Accession: MIMAT0057505
• Description: Picea abies pab-miR396j-3p mature miRNA
• Sequence: 82 - CUCAAGAAAGCCGUGGGAAA - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918