Stem-loop pab-MIR396k

Accession

MI0036657

Description

Picea abies pab-MIR396k precursor miRNA

Literature search

1 open access papers mention pab-MIR396k
(5 sentences)

Sequence

628905 reads, 13947.0 reads per million, 101 experiments

uauuuUUCCACGGCUUUCUUGAACUUcccgaucggcaguguuggcggucaaucucaccgcuaacagauccgcauaagaagCUCAAGAAAGCCGUGGGAAAuua
...(((((((((((((((((((.((((.....(((...((((((((((.......))))))))))...))).....)))).)))))))))))))))))))...

Structure

uau                   A    ccgau   cag          ca 
   uuUUCCACGGCUUUCUUGA CUUc     cgg   uguuggcggu  a
   ||||||||||||||||||| ||||     |||   ||||||||||  u
   AAAGGGUGCCGAAAGAACU gaag     gcc   acaaucgcca  c
auu                   C    aauac   uag          cu 

Annotation confidence High

Genome context

MA_10434401: 5140-5242 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR396k

Mature pab-miR396k-5p

• Accession: MIMAT0044755
• Description: Picea abies pab-miR396k-5p mature miRNA
• Sequence: 6 - UUCCACGGCUUUCUUGAACUU - 26
• Evidence: experimental ; Illumina [1]

Mature pab-miR396k-3p

• Accession: MIMAT0057506
• Description: Picea abies pab-miR396k-3p mature miRNA
• Sequence: 81 - CUCAAGAAAGCCGUGGGAAA - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918