Stem-loop pab-MIR396l

Accession

MI0036658

Description

Picea abies pab-MIR396l precursor miRNA

Literature search

1 open access papers mention pab-MIR396l
(5 sentences)

Sequence

630024 reads, 14059.0 reads per million, 101 experiments

gaaugcugucauauuuUUCCACGGCUUUCUUGAACUUcucgaucggaaauguuggcggucagucgcaucgauaacagauccggauaacaagCUCAAGAAAGCCGUGGGAAAuuauaaagggauuc
((((.((...(((.(((((((((((((((((((.(((.....(((((..(((((.(((((....).)))).)))))..))))).....))).))))))))))))))))))).)))...)).))))

Structure

    g  guc   u                   A   cucga     aa     g    - a 
gaau cu   aua uuUUCCACGGCUUUCUUGA CUU     ucgga  uguug cggu c g
|||| ||   ||| ||||||||||||||||||| |||     |||||  ||||| |||| |  
cuua gg   uau AAAGGGUGCCGAAAGAACU gaa     ggccu  acaau gcua g u
    g  aaa   u                   C   caaua     ag     a    c c 

Annotation confidence High

Genome context

MA_158728: 8114-8238 [-]

Mature pab-miR396l-5p

• Accession: MIMAT0044756
• Description: Picea abies pab-miR396l-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396l-3p

• Accession: MIMAT0057507
• Description: Picea abies pab-miR396l-3p mature miRNA
• Sequence: 92 - CUCAAGAAAGCCGUGGGAAA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918