Stem-loop pab-MIR396m

Accession

MI0036659

Description

Picea abies pab-MIR396m precursor miRNA

Literature search

1 open access papers mention pab-MIR396m
(5 sentences)

Sequence

930484 reads, 19828.0 reads per million, 101 experiments

gaauccugucauauuuUUCCACGGCUUUCUUGAACUUgaagaucaguaguggccgcggccgaucguaucgagaacagauccgaaucacAAGUUCAAGAAAGCCGUGGgaaaauauagagggauuc
(((((((...((((((((((((((((((((((((((((............(((....)))(((((.(((.......))).)).))).))))))))))))))))))))))))))))...)))))))

Structure

       guc                            aagaucaguaguggccgcggcc   -  u   ga 
gaauccu   auauuuUUCCACGGCUUUCUUGAACUUg                      gau cg auc  g
|||||||   ||||||||||||||||||||||||||||                      ||| || |||  a
cuuaggg   uauaaaagGGUGCCGAAAGAACUUGAAc                      cua gc uag  a
       aga                            ---------------------a   a  c   ac 

Annotation confidence Medium

Genome context

MA_20512: 24807-24931 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR396m

Mature pab-miR396m-5p

• Accession: MIMAT0044757
• Description: Picea abies pab-miR396m-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396m-3p

• Accession: MIMAT0057508
• Description: Picea abies pab-miR396m-3p mature miRNA
• Sequence: 89 - AAGUUCAAGAAAGCCGUGG - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918